rs51640162 SNP Detail

Summary

• ID
  rs51640162
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:98940814 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGTCAGAACT GGACATGTCT GCTTGAGGCG AGGTGAGGAA
  ATCTCCCGCC TTATGCAACT GGATTCTCTT CTTTAAAAGA TTATTTTATG TGTATATGTG
  Y
  GTGGGGGATG GGTCTGTACA CATGCCCATG GAGGCCAGAA AGGGCATAGG ATCTCCTGGA
  GCTGGAGTCA CCAGTGGTGT GAGCCACCCT GTCTGCGTG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148463652	ENSMUSSNP6555405	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
ss325079666	CHEV_15_98873364	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs51640162					SNP	T	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:98940814 () rs orientation: forward

Symbol	Name	Function Class
Gm41399	predicted gene, 41399	within coordinates
Gm62755	predicted gene, 62755	34 bp upstream
Rr509292	regulatory region 509292	1635 bp distal
Rr509293	regulatory region 509293	216 bp distal
Rr509294	regulatory region 509294	1265 bp proximal
Rr509295	regulatory region 509295	1457 bp proximal
Rr509296	regulatory region 509296	1831 bp proximal