rs51642694 SNP Detail

Summary

• ID
  rs51642694
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:35284584 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTCCAGGCA GCCTGAAAAG
  GCCACCCAGA GCCGCTCAAA CTCCGCGCGC TCCTCGGTAG CTAAGCTCCG GTCCCGGAGC
  GCGACGGTCA ACCGGGCGCC GGTGGCCACG GCCAGCTCCC GCGCCTTCTG GCGGGTCTTC
  TGCAGCTCTT CGCGTAGGTC CTGAGTGTCC GCGGAGCCGC CCACAGTAAG CACTAAGTGA
  Y
  GGTAGCACGC TGTGGTCTTG TTGAGCGCGT CCAGCAGCGC CTTGCACTCC TCTCTGGCCA
  TGGCGCTGCC CTCCGGCGGT ACCCTACTTG CAACCTTCAA CGTCGTAGGT CGCCTCCAGC
  CCTGATGCCA GCCTTGAGCA GGGCGGACTG AAAGCTCCTC ATGTCCTCGC CGCTGTTCTC
  AACAGAGCTC TCCAGGGACC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148813182	ENSMUSSNP598598	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs51642694					SNP	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:35284584 () rs orientation: forward

Symbol	Name	Function Class
Ankrd27	ankyrin repeat domain 27	1085 bp upstream
Cpgi18874	CpG island 18874	within coordinates
Rgs9bp	regulator of G-protein signalling 9 binding protein	within coordinates
Rr156307	regulatory region 156307	1984 bp distal
Rr167549	regulatory region 167549	within coordinates
Rr400265	regulatory region 400265	870 bp upstream
Tssr65908	transcription start site region 65908	1073 bp upstream
Tssr65909	transcription start site region 65909	1136 bp upstream
Tssr72043	transcription start site region 72043	382 bp downstream
Tssr72044	transcription start site region 72044	393 bp downstream
Tssr72045	transcription start site region 72045	418 bp downstream
Tssr72046	transcription start site region 72046	1778 bp downstream