rs51642780 SNP Detail

Summary

• ID
  rs51642780
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:50319744 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CATTTGTTCC ACTGTGCTTT TCCAGTCCTA CAAATAGCGC
  ACAAATACCA TCGAGCAATG AGTTTGTTGC AGCAGCACTC TCCCAAGAGG GAGCTCACTT
  Y
  GCTGTGGAAC CTGCTTTATC TCACACATCA CATGTTTGTA CACTCGTGCC AAGGAATTCA
  AAGATACATC TCTATGCTGT GCTCACAACT CACCACTCA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss135158359	ENSMUSSNP2445805	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs51642780					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:50319744 () rs orientation: forward

Symbol	Name	Function Class
Slc7a11	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	within coordinates
Tssr33101	transcription start site region 33101	1117 bp downstream
Tssr33102	transcription start site region 33102	1138 bp downstream
Tssr33103	transcription start site region 33103	1222 bp downstream
Tssr33104	transcription start site region 33104	1234 bp downstream
Tssr33105	transcription start site region 33105	1295 bp downstream
Tssr33106	transcription start site region 33106	1339 bp downstream
Tssr33107	transcription start site region 33107	1364 bp downstream
Tssr33108	transcription start site region 33108	1428 bp downstream
Tssr33109	transcription start site region 33109	1493 bp downstream
Tssr33110	transcription start site region 33110	1547 bp downstream
Tssr33111	transcription start site region 33111	1580 bp downstream
Tssr33112	transcription start site region 33112	1619 bp downstream
Tssr33113	transcription start site region 33113	1665 bp downstream
Tssr33114	transcription start site region 33114	1689 bp downstream
Tssr33115	transcription start site region 33115	1748 bp downstream