rs51644132 SNP Detail

Summary

• ID
  rs51644132
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:88203265 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGAGC TTGAAGGAGC GCATCAGCCC
  T
  GTCACCCCCC AGCTAGCAGA ACCAG                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ
ss144900112	ENSMUSSNP4617169	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ
rs51644132					SNP	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:88203265 () rs orientation: forward

Symbol	Name	Function Class
Cpgi540	CpG island 540	1337 bp proximal
Hjurp	Holliday junction recognition protein	within coordinates
Rr23451	regulatory region 23451	1464 bp distal
Rr29783	regulatory region 29783	within coordinates
Tssr12871	transcription start site region 12871	1404 bp upstream
Tssr12872	transcription start site region 12872	1359 bp upstream
Tssr12873	transcription start site region 12873	1721 bp downstream
Tssr12874	transcription start site region 12874	1927 bp downstream
Tssr12875	transcription start site region 12875	1967 bp downstream