rs51646516 SNP Detail

Summary

• ID
  rs51646516
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:70337336 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCAC AAGCTTCAGT GTGGCTGGAC
  Y
  TAAGTCAGTC TGGAGACAGG GATAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss145115287	ENSMUSSNP7088809	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
ss322697615	CHEV_8_72408585	CHEVERUD	SCREENING_POP	f	SNP			C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs51646516					SNP	C	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:70337336 () rs orientation: forward

Symbol	Name	Function Class
Cilp2	cartilage intermediate layer protein 2	within coordinates
Cpgi20423	CpG island 20423	1181 bp distal
Cpgi20424	CpG island 20424	682 bp proximal
Cpgi20425	CpG island 20425	1125 bp proximal
Gm33746	predicted gene, 33746	within coordinates