rs51648200 SNP Detail

Summary

• ID
  rs51648200
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:37231154 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGTTGAAG CCAGACAGTC
  AGGCAATATT ACAGAAGTGG AATCTTCCAG CGAGAGAACA TTCTCTAAAG GAAAGAGCAT
  CAGGGGCGAA AGAGGCCCTT GGTGAATTCA ACACCATGTT GTGTAAAAGG AATGGCTGAG
  AAGTAGAAAG GGAAGTACCT TCCCTATGTG ACAAGATAAG TAAAGGCCCA AACTAGGACT
  R
  TCCTTTCAGC TTCTCTGGTA TTTCTACAGC TTGGGTTTTG GAGACTTTCT TAGGTGGGCA
  CCAGAGACTA CAAGGGGACA TATTTTTGTA AATCTTTGTG GAGGAGGGTC CTGACACAGA
  TCCCTCATGG GAAATGAGGT CCGGCTCTAG TAGACACAGT GGTATGCTTC TCCTACCTTT
  CAGGTTGACA CCCCTTGGCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61768024	NES17689023	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A		G	G	A	G
ss148880346	ENSMUSSNP1170382	ENSEMBL	ENSEMBL_Sanger	f	SNP		G						G				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51648200					SNP	G	G	G	G	G	G	G	G	G	G	A	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61768024	NES17689023	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:37231154 () rs orientation: forward

Symbol	Name	Function Class
F13a1	coagulation factor XIII, A1 subunit	within coordinates
Rr271551	regulatory region 271551	1754 bp distal
Rr279043	regulatory region 279043	1836 bp distal
Rr281233	regulatory region 281233	1246 bp proximal
Rr283270	regulatory region 283270	1354 bp distal