rs51648624 SNP Detail

Summary

• ID
  rs51648624
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr16:11366859 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGAGTCTAG CTCTCTTCCA
  GAGCCACCTG GTTCTGGAGC CCAGTGGCAG AGGACCTGCT CCAGGAACAG ACAGAAACCA
  GAAGCTTCAA TTCTTAATAA TTAAACTGTA TATTTGTTTT TATTCCTCTT TTTCTAAATA
  TATCAACTGT TTTGCTTGTT CTCTTGGGTT TTAGAGTTGA ATATTCAACC CCAGTTATTC
  Y
  AATATTAATT AGTTTTTTAT TTAGTTTTAT TTTATGACAT ATCTTGTTAT GTAGCATAGA
  CTAGTCATGA ACTCAACATT CTCCTTTGTC CTACTAAGTG TTGGGATTAC AGGTGGATGC
  TATTGTGCTT GGGACATTTA AAAAATGTGC TACTTTAAAA TTAGATACTT ATGTTTTATA
  TTTTTTATAT CTTTTTATTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss147852292	ENSMUSSNP2738420	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs51648624					SNP	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:11366859 () rs orientation: forward

Symbol	Name	Function Class
5830487K18Rik	RIKEN cDNA 5830487K18 gene	747 bp upstream
Snx29	sorting nexin 29	Intron