rs51649040 SNP Detail

Summary

• ID
  rs51649040
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:100819660 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCACCTGCCA AAACTTCCTG
  AAATGACACC GGTTGACTGA CCAGTGATGT AGCCCAGTGG TAGGTAAGTC CCTTGACTAG
  CCTATGGGAG ACCCTTTGAG TTCCACTCCT AGTACTGAGA AACAACAAAA AAGCTTTGCT
  ACTGCCTTCT AAAACACAAC GACTAATACT GCTCTATGAA AGTAAGTAGA TATAACATCA
  R
  TACAGTAAAA CAATAACTGT ATCACTGTCT TACAAGACAT ATACATATTA AACCAGGAAC
  TCTACTGTCA ATTTCTGCTC CTGACACAAG GCAGGGGTCC AAAACTATTC ACAGAATGAA
  TTTTACCTTG TAACTGTCTT ATTTAGAATC AAAACATACA GGCCAGTATC TTAAGGCACT
  CAGCACAAAT AACTACAAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss148928048	ENSMUSSNP1823034	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs51649040					SNP	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:100819660 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Coq2	coenzyme Q2 4-hydroxybenzoate polyprenyltransferase			Intron
				Noncoding-Transcript-Variant
Cpgi16113	CpG island 16113			1913 bp proximal
Gm15777	predicted gene 15777			within coordinates
Rr615537	regulatory region 615537			79 bp distal
Rr615538	regulatory region 615538			185 bp distal
Rr615539	regulatory region 615539			660 bp proximal
Rr615540	regulatory region 615540			1629 bp proximal