rs51653934 SNP Detail

Summary

• ID
  rs51653934
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:188118597 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCACAGACA CAAAATACTT
  GAGTGGAAAC AAGTGTTCTG TTGTATGTTC TTAACGGGCG TTTTCCCATG ACATCTGTAT
  GTAGCAGAAA CTGCATACCT GTATTTATTT TGAAATCAAA TGAGTACCTT AAGCAGGTGG
  CTTGTTGTAC AAATGCCAGG AACTTAAGGA AAGAAGTCAC TATCTCTACT TTGGGAATAC
  R
  TGGTCACATC TAAGATAAAC AGCATATACA GGGCCACATC AACTCCTGGC AGGTGGAAAC
  ACTGTAGATG GGTAGAGAGA CATTTGTCTT ATAAACATCA GGAGAATGTT AGGGTGTTTT
  ATAAATTCTC TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC TCTCTGTGTG TGTGTGTGTG
  TGTGTGTGTG TGTGTGTACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60358716	NES15859044	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51653934					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60358716	NES15859044	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:188118597 () rs orientation: forward

Symbol	Name	Function Class
Rr425688	regulatory region 425688	818 bp distal
Rr425689	regulatory region 425689	1534 bp distal
Rr425690	regulatory region 425690	1291 bp distal
Rr425691	regulatory region 425691	1132 bp distal
Rr425692	regulatory region 425692	1042 bp distal
Rr425693	regulatory region 425693	950 bp distal
Rr425694	regulatory region 425694	224 bp distal
Rr425695	regulatory region 425695	971 bp proximal
Rr425696	regulatory region 425696	1402 bp proximal
Ush2a	usherin	Intron