rs51654101 SNP Detail

Summary

• ID
  rs51654101
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:40247234 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTTCACCTCA ATTCTCAGAT TACTACCCAG TTTATCTCGA
  AGGGTTTTAA AAAATGCCTG TTATTAGAGA AGAGCGAGGC ATAAGGTTAC AGATCTAATT
  Y
  TTTTACCTGA TTAAACGTTT ACTATTTCAT AGGAATGGTT TCTGAAAGGT GTGTTTCATG
  GTTATTTTCA TTTTACAGTA TTGGAACAGA TTCATTTCC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52244076	NES15264534	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C	C	C	T	C	C	C	C	C	C	C
ss147065263	ENSMUSSNP3031069	ENSEMBL	ENSEMBL_Sanger	f	SNP		C							T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51654101					SNP	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52244076	NES15264534	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:40247234 () rs orientation: forward

Symbol	Name	Function Class
Cdk19	cyclin dependent kinase 19	within coordinates
Rr214650	regulatory region 214650	1834 bp distal
Rr214651	regulatory region 214651	634 bp distal
Rr222642	regulatory region 222642	1363 bp distal
Rr384549	regulatory region 384549	24 bp upstream