rs51654992 SNP Detail

Summary

• ID
  rs51654992
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:126219638 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTCCTGGCA CAGAGGCTGT
  GCCAGAGACA GGTGAGGCAG AGGGCTGTCA ATCAAAGGTT AAGAGTAAGT GGTGGCGTGT
  TCATCTCCTA AGAAGCAGGT GCTCAAGGGT CCAGCAGCTA GGACTGGCCA TTGACACTGA
  GGACGGGTGT TCTTGACCTT AATTTTCTGT CTGACGGAAG GAAGGTTGTT TTCGAACCCA
  Y
  CCTTAGAAGA TCTACAATCT AGGGTTGCTC ATTGCCCAGA ACCCCGTGTT TCTTGGGCAC
  ACCATCAAAG GGGAAAAGGT CAGAGGTTGG AAAACCTGAG CTCAGAGTCT CATGTGGTAT
  TGATTGAGTC TGCGTGTCTC TAAATGAGCC ATGAAATACA ATGTAACTTA CTATATGTGG
  TCTAGTATGA ACTTGCAAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss145875046	ENSMUSSNP1250002	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs51654992					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:126219638 () rs orientation: forward

Symbol	Name	Function Class
Gm39086	predicted gene, 39086	1985 bp upstream
Gm39087	predicted gene, 39087	1233 bp upstream
Rr655535	regulatory region 655535	607 bp distal
Rr655536	regulatory region 655536	994 bp proximal
Rr655537	regulatory region 655537	1427 bp proximal
Rr655538	regulatory region 655538	1921 bp proximal