rs51655071 SNP Detail

Summary

• ID
  rs51655071
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:48041162 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGTGA GTCAAATTCC CTACTCCTGG
  K
  TGGGGCATGG GAGGAAGATG AGGGC                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss145708999	ENSMUSSNP1909445	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T	T
ss325406552	CHEV_17_47867186	CHEVERUD	SCREENING_POP	f	SNP				G	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs51655071					SNP	G	T	T	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:48041162 () rs orientation: forward

Symbol	Name	Function Class
Pgc	progastricsin (pepsinogen C)	within coordinates
Rr528106	regulatory region 528106	472 bp proximal
Tssr5147	transcription start site region 5147	1486 bp downstream
Tssr5148	transcription start site region 5148	924 bp upstream
Tssr5149	transcription start site region 5149	1246 bp upstream
Tssr145004	transcription start site region 145004	1495 bp downstream
Tssr145005	transcription start site region 145005	1474 bp downstream
Tssr145006	transcription start site region 145006	1445 bp downstream
Tssr145007	transcription start site region 145007	1413 bp downstream
Tssr145008	transcription start site region 145008	1392 bp downstream
Tssr145009	transcription start site region 145009	1364 bp downstream
Tssr145010	transcription start site region 145010	982 bp downstream
Tssr145011	transcription start site region 145011	963 bp downstream
Tssr145012	transcription start site region 145012	946 bp downstream
Tssr145013	transcription start site region 145013	894 bp downstream
Tssr145014	transcription start site region 145014	100 bp downstream
Tssr145015	transcription start site region 145015	85 bp downstream
Tssr145016	transcription start site region 145016	81 bp downstream
Tssr145017	transcription start site region 145017	361 bp upstream
Tssr145018	transcription start site region 145018	373 bp upstream
Tssr145019	transcription start site region 145019	404 bp upstream
Tssr145020	transcription start site region 145020	425 bp upstream
Tssr145021	transcription start site region 145021	451 bp upstream
Tssr145022	transcription start site region 145022	483 bp upstream
Tssr145023	transcription start site region 145023	510 bp upstream
Tssr145024	transcription start site region 145024	621 bp upstream
Tssr145025	transcription start site region 145025	965 bp upstream
Tssr145026	transcription start site region 145026	1221 bp upstream
Tssr148459	transcription start site region 148459	1436 bp upstream
Tssr148460	transcription start site region 148460	1384 bp upstream
Tssr148461	transcription start site region 148461	1372 bp upstream
Tssr148462	transcription start site region 148462	1329 bp upstream
Tssr148463	transcription start site region 148463	956 bp upstream
Tssr148464	transcription start site region 148464	871 bp upstream
Tssr148465	transcription start site region 148465	110 bp upstream
Tssr148466	transcription start site region 148466	76 bp upstream
Tssr148467	transcription start site region 148467	392 bp downstream
Tssr148468	transcription start site region 148468	423 bp downstream
Tssr148469	transcription start site region 148469	513 bp downstream