rs51656803 SNP Detail

Summary

• ID
  rs51656803
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:29150630 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGGAAGGA GGCTTGGGAG
  CAGCCACACA CACCAAGAGC ACGTATTCCA TAAATATTAG TTATTATTAG GATTGCTCAG
  ACACACTGGT TTTCAATAGT CACTTCAAAC CTTTGTCAGT TTAGAGGGAT GGACTCAGCT
  CCATGCTTTA CTCTTATATT TCTGATCCAA AGGTGACTCA CAAGTACAAG AATTCTTGAG
  Y
  TGGGCACTGT AGGGAAGGCT CAGCTTAAGA GCACACACAC ACTGCTTTTG CGGGAGACCT
  GAGTCTGCTT CCCAGCACCC ATGCTGGGCA GCTGTGACTC CAGCTGCTGG GGTGGGGATG
  CTCTTTTCTG GCCTCTGCAC GCTCCCGCAC ACACATGTAC AAAGGCACAC AAAGGGAGCT
  GGAGATGCAG GAGAGGATAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60559595	NES16576374	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	T	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51656803					SNP	C	C	C	C	C	C	C	C	T	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60559595	NES16576374	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:29150630 () rs orientation: forward

Symbol	Name	Function Class
Gm16191	predicted gene 16191	within coordinates
Rr392487	regulatory region 392487	209 bp downstream
Rr524716	regulatory region 524716	1028 bp distal
Rr524717	regulatory region 524717	1103 bp distal
Rr524718	regulatory region 524718	151 bp distal
Rr524719	regulatory region 524719	384 bp distal
Rr524720	regulatory region 524720	within coordinates