rs51657238 SNP Detail

Summary

• ID
  rs51657238
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:41441539 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAAAGTGAG TTCCAGGACA
  GCCAGGGCTA CACAAAGAAA TCCTGTCTTG AAAACAAACA AACAAACAAA CAAACAAACA
  AACAAACAAA CCCCAAGAAA ACAAAAAACA AAAAATAAGT GATGCAGAGA CTCTTTAGGG
  GGAATCATGG TTTGGTTGCT TCTTGATGTG GTTCTCAGAT ACTGCAACCT CTACATCATC
  R
  TCTAACTGTA AACACTTGTG GGTGTGGCTC TGGGGTGAAC CAGGCAGATA AGGAACACCG
  GGGTAGCATC TCAGATCATC TTGCGTTCCT AGGTTCCTAT TTTACCTATT AGGATGCATG
  CGTGAAGCCG AACCTACTCC ATGAATAGTT CGCCAATTGG GCTTTCATTG TTGTTGAGCC
  TCTGTTTATC TTCTGGGCTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61386557	NES16765673	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51657238					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61386557	NES16765673	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:41441539 () rs orientation: forward

Symbol	Name	Function Class
Gm48742	predicted gene, 48742	within coordinates
Mir100	microRNA 100	1182 bp upstream
Mir100hg	Mir100 Mirlet7a-2 Mir125b-1 cluster host gene	within coordinates
Tssr84510	transcription start site region 84510	1249 bp upstream
Tssr84511	transcription start site region 84511	1755 bp upstream