rs51657305 SNP Detail

Summary

• ID
  rs51657305
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  128
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:122296658 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCCAGCTGCC CTTCCAGTGC ATGTAGGGGT CTGCAGGTTT
  GCTTGCGTAC AGTGTGTATG CATCTCTGTG GTGTGAGGAT GCCTCAAGTT CAGAGTTGCT
  S
  AGCTTCCTTC TGGGCTAGGT CTGCCGCTGT TCAAGCTTTT CTCATTGTGG TTCTGCTCTA
  TCCTTTACCT GGAGATATAC CAAATATGAA GAATATACTT                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52524803	NES15586803	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51657305					SNP	C	C	C	C	C	C	C	C	C	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52524803	NES15586803	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:122296658 () rs orientation: forward

Symbol	Name	Function Class
Gm63354	predicted gene, 63354	1182 bp upstream
Gm63496	predicted gene, 63496	1969 bp downstream
Rr404309	regulatory region 404309	1468 bp upstream
Rr498317	regulatory region 498317	1193 bp distal
Rr498318	regulatory region 498318	872 bp distal
Rr498319	regulatory region 498319	1396 bp proximal
Rr498320	regulatory region 498320	1640 bp proximal
Tssr127312	transcription start site region 127312	880 bp downstream
Tssr130315	transcription start site region 130315	1163 bp upstream