rs51657370 SNP Detail

Summary

• ID
  rs51657370
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:11503577 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGATGAAAAT GAGGAGACAT
  GAGAACCCTC CAGCTGTATT GATTCCAGTG TCAGGTGGTT GAGACTTTGG ACAGAGTTCA
  GTACTTATTC AGAACATTAG TGGGGCATGA TCCAGGAGCC AGCATTTGCC CTCTGTGGTG
  GGTGCTTTTG AAGTAAGAAG TCCAAGTCTT GGAGGGTATG TCTAAAATCG AAAGAATAAT
  R
  ACTAATTTGG CATTAAAATG TCACAGGTTA CTTCTATACC TGTGGAAGCT GTCAGTCATT
  GCATCTTTAC TGACATCAGC ACTGGCTTGG TTCAGTTTGT CATTGTTATT TTGCCTGCTC
  AGAAGACTGT GGTTTGTATC CTATTGTGTA ACCAAGGAAG ACTTGTATAT TTGTATTTGA
  CACTGCATCT TAGCATTTTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss52615905	NES15504985	PERLEGEN	MM_PANEL2	f	SNP	A	A	G	A	G	A	A	A	A	G		G	G	A	A		A
ss324264586	CHEV_13_11580958	CHEVERUD	SCREENING_POP	f	SNP											G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs51657370					SNP	A	A	G	A	G	A	A	A	A	G	G	G	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52615905	NES15504985	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:11503577 () rs orientation: forward

Symbol	Name	Function Class
D13Ertd463e	DNA segment, Chr 13, ERATO Doi 463, expressed	574 bp distal
Rr387978	regulatory region 387978	1094 bp upstream