rs51657734 SNP Detail

Summary

• ID
  rs51657734
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:31399945 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAAATAGCC CGCTGGCTAA
  AGGCTCCTGC CACCAAGGGT GACTTCCCAA GTTTAATCCG TGGGAACTAT ATGGTGGCAG
  AGACCTGACT CCCAGAAGCT GTCTTCTGGC ATCCTTTCAT CCTATGTTGC ACGCTCATGC
  CCACAGGCAT GTGCACAAGT AATACATGTA ATTTAAAAGG TCGATGACAA CTGGGGCAAA
  W
  GTATCAAGCA ATAATACTAA TGGACTTTCT CTGCCGCAAA CAGGTATCCT ACCAATTTCC
  CTTTTTTGTC CATAATATTA AACTTTCACA ATCTTACCTT GCCAGGTCTG CCTTATTATT
  ATGAACATTC AATGAACCAT TTCATATTAA ATCTAATAAA AATATATTTA ATGGCTTACA
  GTTTTATTAA AACTTCAGAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61589441	NES17532900	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T	T	T	A	T	T	A		T	T	A	T
ss137567764	ENSMUSSNP6572742	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T										A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51657734					SNP	T	T	T	T	T	T	T	T	A	T	T	A	A	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61589441	NES17532900	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:31399945 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4532	CpG island 4532	906 bp proximal
Dld	dihydrolipoamide dehydrogenase	within coordinates
Rr265302	regulatory region 265302	255 bp proximal
Rr403256	regulatory region 403256	1441 bp upstream
Tssr116040	transcription start site region 116040	1422 bp downstream
Tssr116041	transcription start site region 116041	1487 bp downstream