rs51658936 SNP Detail

Summary

• ID
  rs51658936
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:115875636 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GACTCATCTC ATCCATCTAG AAATCCTGTG AGAAAGGCAT
  TTTGCACTTT ACTAGTGAGG TAACTTCAGG ACAAGAAGGG TTGAATGACT TTTTTGAGTC
  M
  CACTGGTGGC TGAGGAAGAT TCAGACTGCA GTCTTAGTCA AAGCAGGTGC TTAACCATTA
  AGGCTGTATC TGCTGCCTCT GGAAGTAAGG CACTGTGGG                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147277466	ENSMUSSNP6617279	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C	C
ss321276776	CHEV_4_115691044	CHEVERUD	SCREENING_POP	f	SNP				A	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs51658936					SNP	A	C	C	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:115875636 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14625	CpG island 14625	236 bp distal
Faah	fatty acid amide hydrolase	within coordinates
Rr91643	regulatory region 91643	1765 bp proximal
Rr99792	regulatory region 99792	35 bp distal
Tssr38489	transcription start site region 38489	1156 bp downstream
Tssr42842	transcription start site region 42842	675 bp upstream
Tssr42843	transcription start site region 42843	576 bp upstream
Tssr42844	transcription start site region 42844	405 bp upstream
Tssr42845	transcription start site region 42845	376 bp upstream
Tssr42846	transcription start site region 42846	339 bp upstream
Tssr42847	transcription start site region 42847	308 bp upstream
Tssr42848	transcription start site region 42848	292 bp upstream
Tssr42849	transcription start site region 42849	263 bp upstream