rs51660903 SNP Detail

Summary

• ID
  rs51660903
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:90711765 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCAG ACACTGGGGA AGTAGCCTGT
  Y
  ACAGGATGGC ATGCAGAGCA GAGCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss133379008	ENSMUSSNP2575133	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss321852504	CHEV_6_90684777	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs51660903					SNP	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:90711765 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17726	CpG island 17726	855 bp proximal
Iqsec1	IQ motif and Sec7 domain 1	within coordinates
Rr634305	regulatory region 634305	1506 bp proximal
Tssr62039	transcription start site region 62039	1329 bp downstream
Tssr62040	transcription start site region 62040	1973 bp downstream
Tssr62041	transcription start site region 62041	1995 bp downstream