rs51661736 SNP Detail

Summary

• ID
  rs51661736
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:26750204 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTGGCAGTG TGGTTCTGGG
  ACATGAATTA TGATGTCAGA CACATCTGAG TTCAAATCCC CTCCTTGAAG CTTGGTAACG
  AGCTGTGTGA TTTTAAGCAG CTTATTTACT CTCTCTGGTT CCCATTTGTA AATGAAGAGC
  ACAATTGTTG ATTACGATAT CATTTTGATT TTAGACAAAG TCTCCCCCAT GTAGCCTAAG
  Y
  AGGCTTCCAA CACTCTCTGT GTGTATGGTG TATGTCTATG TACAGGGATA TGGGAAAGGG
  GCGTGTACAA GGAGCACATG TGGAGGCCAG AGGAAGACAG CTAATGTCTC TAATGCTCTC
  TGACTTAGCC CCTTGAGACA CTCTCTGTCC CAACACTGTC ACCATCCTTT GACTAGGTTA
  ATTGACTTAT CAACAAGCAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60554859	NES16569811	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51661736					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60554859	NES16569811	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:26750204 () rs orientation: forward

Symbol	Name	Function Class
Gm34606	predicted gene, 34606	within coordinates
Rr329984	regulatory region 329984	1804 bp distal
Tssr143239	transcription start site region 143239	578 bp upstream
Tssr143240	transcription start site region 143240	1649 bp upstream
Tssr143241	transcription start site region 143241	1665 bp upstream
Tssr143242	transcription start site region 143242	1679 bp upstream
Tssr143243	transcription start site region 143243	1704 bp upstream
Tssr143244	transcription start site region 143244	1735 bp upstream
Tssr146959	transcription start site region 146959	452 bp downstream
Tssr146960	transcription start site region 146960	1384 bp downstream
Tssr146961	transcription start site region 146961	1407 bp downstream
Tssr146962	transcription start site region 146962	1435 bp downstream
Tssr146963	transcription start site region 146963	1480 bp downstream