rs51661860 SNP Detail

Summary

• ID
  rs51661860
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:30850097 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATATGTTCT ATTTAATTTG
  CAGTTTGCAC ATGACTTTGG TGAAGAATCC TGTCCAACAA CTGTTATCTA AGGAACCCTA
  AGCACTTCAT TTACATCAGC ACCCCAAGCC TGCACATTAC CTGTGTAATT CACTCCTCAG
  ATCAGTGCTT AGCAACAGCA AGCACTCAAA AGATGGCAGC TATCTCTAGT AAGGAGCAAA
  Y
  GAGACCAAGT CAATGAAAAT GAGCATAGAA GACAAAAAAA AGCCTCAGCC ACAGTTGATA
  CTTGGTGTTA AGGAAAAAGC ACAAATTACG AAGGAACCTC TAGGGCAATG CAGTCTCTAT
  CTTCCTGTAG AAGGTACCAT AGCATTTATA GCTGGAGAGC CACCATCCTC TACACAACTT
  TGGGTAAATC ACTGAAACCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss61370382	NES16750356	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs51661860					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61370382	NES16750356	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:30850097 () rs orientation: forward

Symbol	Name	Function Class
Gm10700	predicted gene 10700	1401 bp downstream
Gm69354	predicted gene, 69354	953 bp downstream
Rr675916	regulatory region 675916	1452 bp distal
Rr675917	regulatory region 675917	1556 bp distal
Rr675918	regulatory region 675918	1453 bp proximal
Rr675919	regulatory region 675919	1712 bp proximal