rs51661890 SNP Detail

Summary

• ID
  rs51661890
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:153061478 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GTTTAAAGA CTAGCATGTT ACTGATTGAA
  CGGGTGTGGA GGGGTCCCCT GTTGCCAAAG AAAAGAAAGG GAGGGAATTG AAAGAGGAAT
  GGCTTTAGGG CAAGGAAACC TTCAGCTGGC ACAACCCATT AGCTTCGTGT TTTTAACTCC
  M
  TTGGCTTTAT GGGAAAACTG TCACTTTAGA GCGCGACTGT ACAGGAGCCC CAGGTAGGGA
  GGAGATAGGC TCTTTGCAGA TCCTTGACCT GACCGAGTGT GGATCCTCGA GGTGAATTCA
  GCCACCAACA CCGTGTGCAG GGAAGGGCAA                                 
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60822410	NES16493724	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	A	C	C	C		A	C	A	A		C
ss320071231	CHEV_1_155032862	CHEVERUD	SCREENING_POP	f	SNP									C					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs51661890					SNP	C	C	C	C	A	C	C	C	C	A	C	A	A	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60822410	NES16493724	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:153061478 () rs orientation: forward

Symbol	Name	Function Class
Cpgi864	CpG island 864	38 bp proximal
Lamc2	laminin, gamma 2	within coordinates
Rr13130	regulatory region 13130	1523 bp proximal
Rr28719	regulatory region 28719	within coordinates
Tssr14250	transcription start site region 14250	279 bp downstream
Tssr14251	transcription start site region 14251	339 bp downstream
Tssr14252	transcription start site region 14252	370 bp downstream
Tssr14253	transcription start site region 14253	393 bp downstream
Tssr14254	transcription start site region 14254	410 bp downstream