rs51662327 SNP Detail

Summary

• ID
  rs51662327
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:79831322 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCACTGCCA GAAAATGTGA
  AATTCCCTGT GTGGACCAAA AAAACAAAAA AAAAAACAAA AACAAAACAA AAACAAAAAC
  AATAAAAACC TCTGTTTCTA AGAGTAAAGT ACATTCCTGA GTTTGGCCGT GATGGAGGGG
  GCGCTGTCTA GAAGCAAGGT GCAAGCCCTG CACAAAAGTT AGGGAGAAGG CGAGAAACAG
  R
  CACAGTTGAA TGAATGATGT GAGATAGATC GGGGCTAGGG TGGAGAAAGA GGCTGAGTCT
  CCCTCACCAG CTTCCTTCGA ACTCCTATGC ATCTGCAAAA CCCCAACTTC TAAGGCCCCC
  TAACTCACGC TTGCCAGGGT GATCTACACC CATCTCCCTC TATGCTTTGT GAAATAAACC
  AGTTTTTTTT TTCCAGAGTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss61291677	NES16901198	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	G	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs51662327					SNP	A	A	A	A	A	A	A	A	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61291677	NES16901198	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:79831322 () rs orientation: forward

Symbol	Name	Function Class
Abca7	ATP-binding cassette, sub-family A member 7	1006 bp upstream
Cnn2	calponin 2	88 bp downstream
Cpgi1834	CpG island 1834	896 bp proximal
Cpgi1835	CpG island 1835	1735 bp proximal
Rr225140	regulatory region 225140	478 bp proximal
Rr402033	regulatory region 402033	799 bp upstream
Tssr94446	transcription start site region 94446	630 bp downstream
Tssr94447	transcription start site region 94447	453 bp downstream
Tssr94448	transcription start site region 94448	398 bp downstream
Tssr94449	transcription start site region 94449	186 bp downstream
Tssr94450	transcription start site region 94450	967 bp upstream
Tssr94451	transcription start site region 94451	991 bp upstream
Tssr94452	transcription start site region 94452	1027 bp upstream
Tssr94453	transcription start site region 94453	1054 bp upstream
Tssr94454	transcription start site region 94454	1975 bp upstream
Tssr98373	transcription start site region 98373	140 bp upstream
Tssr98374	transcription start site region 98374	86 bp upstream