rs51662670 SNP Detail

Summary

• ID
  rs51662670
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:12504138 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGTTAGAAA GGCACCTGAG
  AGATTTGCAA GAACCCCTAA GGAACAGGGT GGGGCATCAG ACAGGCTACT GTGGCAAGGC
  ATAGTTACAA GGTTTCATGG ATAGGTAAGA CACAGATGAT ACCACAAAAA AGAATGAGAA
  AAATCCTCCA ACAGCTGCCT GCCTGTAAAC ATTTAGAACA ACAGTTAAGA AGTTTGAAGG
  R
  AAGCACTCTG GGTAAGGTTA AAAAAGACAT CCCCAGAGGG CAAGGTTCCT GTGCCAGAGA
  TGAACTACTT CCTAACTGTG GTTGATTGCA GAGGCCCCCT GGGGTTTCTA GCCACCAAGA
  CTACCAGACT ACAAGACTAC CAGGTTCTAC AGCTGAACAC AGCCACGTAT ATCGATTGTA
  GACCTGAGAA CTCCAGCTGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss60571592	NES16043250	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	G	G	G	G	G	G		A	G	A		G
ss148678627	ENSMUSSNP4414272	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G					G
ss322498736	CHEV_8_12454138	CHEVERUD	SCREENING_POP	f	SNP											G				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs51662670					SNP	A	A	G	G	G	G	G	G	G	G	G	A	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60571592	NES16043250	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:12504138 () rs orientation: forward

Symbol	Name	Function Class
Gm56835	predicted gene, 56835	within coordinates
Rr381713	regulatory region 381713	within coordinates