rs51664069 SNP Detail

Summary

• ID
  rs51664069
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:129060028 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTGTTGGGC ATCCGTGATT
  GTAAAGCCAG CATCACTAAA CCAATTGCTT CTAAAGCCAG TCACTGGGGT CAACTACACT
  GAAGCAGGAA GAGAAGAGAG AATTGAAGCT AACAAAGGAA GCCAAGTGGG AAGTGGAAGT
  TAGACAAGAC CGGAAATGGT GCAGGGTGGG AAGTTAAGCA GGGCAGGAAG TAAAGTGGAA
  S
  CAGAGCAGGA AGTAAAGAAA GACCAGGAAG CAAGGTAGAA TGGGAAGGAA AGACCAGGAA
  GCAGTGTAGG GCAGGAAGCA GAGACTAAGT GTCCAGCACC CTCTGTCCTG TTCATAGTTG
  TCACTGGCAT ACTCAGGAAG CTCACAAGGG GTCCTCTCTG TTCCTCTTCA GCAATCACAC
  TGCCCAACAT CATAGTCGGG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60840187	NES16015860	PERLEGEN	MM_PANEL2	f	SNP	C	G	G	C	C	G	C	C	C	G	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51664069					SNP	C	G	G	C	C	G	C	C	C	G	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60840187	NES16015860	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:129060028 () rs orientation: forward

Symbol	Name	Function Class
Rr109750	regulatory region 109750	828 bp distal
Rr127045	regulatory region 127045	828 bp distal
Rr127046	regulatory region 127046	within coordinates
Stx2	syntaxin 2	1593 bp downstream