rs51664768 SNP Detail

Summary

• ID
  rs51664768
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:125319687 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATGATTTGG TGAGTAAAAG
  CACCCACGGA AATACCGCTA CATCTGTAAC CCCACAGTCA AAAAGGAGAA CTGACAGGCT
  CTGGTTGGCA TCCAGCCTAG CTAGGAAAGA GAACCTGGGT CCCAGGTTCA GGAGAGATCC
  TGTTCAAAAT GAGGAGGTAC AACGTGCTCA GAGGTTACCT AAAGCCTCCT GGCATTCCTG
  M
  ATTCACACAG GTACAGGTGC TCAGACAGAC ACACACGCTA AACATCAGGC AAGGTATAGC
  TTACTCCTCC AGACACAGAC CAAAATGCAT ACTGGGAAAC AGAGCCCAGG TCTTCTTCCT
  GTGCCCTCCA ACAAGCCTAG GCCTAAAGTT TCTGACCAGT TTCCTCATAG AGTCAGAGGA
  CATGATTTTT TAAACTTGTC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60793433	NES16463170	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51664768					SNP	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60793433	NES16463170	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:125319687 () rs orientation: forward

Symbol	Name	Function Class
Actr3	ARP3 actin-related protein 3	955 bp downstream
Rr417385	regulatory region 417385	1338 bp distal
Tssr13374	transcription start site region 13374	1816 bp downstream