rs51665850 SNP Detail

Summary

• ID
  rs51665850
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:43879554 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGAGG CTGTATGCTC AACCCACCTC
  K
  GAGTTATTCT ATCCCCGGGG GTAAA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62747669	NES17340460	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	G	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51665850					SNP	T	T	T	T	T	T	T	T	G	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62747669	NES17340460	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:43879554 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9171	CpG island 9171	172 bp distal
Gm64747	predicted gene, 64747	within coordinates
Pla2g7	phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma)	within coordinates
Rr527121	regulatory region 527121	384 bp distal
Rr527122	regulatory region 527122	within coordinates
Tssr144685	transcription start site region 144685	658 bp downstream
Tssr144686	transcription start site region 144686	526 bp downstream
Tssr144687	transcription start site region 144687	506 bp downstream
Tssr144688	transcription start site region 144688	360 bp downstream
Tssr144689	transcription start site region 144689	205 bp downstream
Tssr144690	transcription start site region 144690	170 bp downstream
Tssr144691	transcription start site region 144691	122 bp downstream
Tssr144692	transcription start site region 144692	71 bp downstream
Tssr144693	transcription start site region 144693	24 bp downstream
Tssr144694	transcription start site region 144694	within coordinates
Tssr144695	transcription start site region 144695	26 bp upstream
Tssr144696	transcription start site region 144696	43 bp upstream
Tssr144697	transcription start site region 144697	733 bp upstream
Tssr148130	transcription start site region 148130	134 bp upstream
Tssr148131	transcription start site region 148131	1285 bp downstream
Tssr148132	transcription start site region 148132	1308 bp downstream