rs51666366 SNP Detail

Summary

• ID
  rs51666366
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30824609 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGAAGGTCCA CTCCGTGAAG GTTTCGGCGG TGGTCTCACT
  ACGACGCTTA CAGGAGATGC ACAGGATTTT GAAGGTCATC CCATACACAG CCTCGGTATC
  R
  GAATCCACCT CCACGCAGCC CCCCCAGGCT GAGGATACTG CGGACACAGT GGACTCCGGT
  TATCGAGGCG CCTGCCACCC GAGGCAACAC CGGGCTTGC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss148700216	ENSMUSSNP2614081	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
ss322139520	CHEV_7_31910203	CHEVERUD	SCREENING_POP	f	SNP			G	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs51666366					SNP	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30824609 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18836	CpG island 18836	within coordinates
Cpgi18837	CpG island 18837	1010 bp proximal
Rr645025	regulatory region 645025	672 bp proximal
Rr645026	regulatory region 645026	1650 bp proximal
Scn1b	sodium channel, voltage-gated, type I, beta	within coordinates
Tssr71935	transcription start site region 71935	1532 bp downstream
Tssr71936	transcription start site region 71936	1575 bp downstream
Tssr71937	transcription start site region 71937	1737 bp downstream
Tssr71938	transcription start site region 71938	1766 bp downstream
Tssr71939	transcription start site region 71939	1809 bp downstream
Tssr71940	transcription start site region 71940	1980 bp downstream