rs51666838 SNP Detail

Summary

• ID
  rs51666838
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:15147301 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GATCC TGGGGATTGC ACACTCATGT
  R
  TGCAGCCCTG TCTTTACAAT GACCC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss146047788	ENSMUSSNP1991867	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
ss321047392	CHEV_4_15074448	CHEVERUD	SCREENING_POP	f	SNP		G	A
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs51666838					SNP	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:15147301 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14054	CpG island 14054	1475 bp proximal
Necab1	N-terminal EF-hand calcium binding protein 1	within coordinates
Rr97381	regulatory region 97381	1291 bp distal
Rr100616	regulatory region 100616	299 bp proximal
Tssr40968	transcription start site region 40968	1640 bp downstream
Tssr40969	transcription start site region 40969	1660 bp downstream
Tssr40970	transcription start site region 40970	1676 bp downstream
Tssr40971	transcription start site region 40971	1710 bp downstream
Tssr40972	transcription start site region 40972	1750 bp downstream