rs51667284 SNP Detail

Summary

• ID
  rs51667284
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:100658458 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCTCATCG ACTTCCACAC
  CGACCCAGCC TCCAGCTGTG GCTTCCATTC TCTTCACAAA CACTGAGAAG CCACTCCATC
  GCACAGACAC TGGTACACAG AGCGGGAGCA CATCCTTGGA CCGACAGGAT GACTGCACAT
  AGACTTGTCA TATCCATATT GCTTAGTCAC TTGTGCATGA CACATGAACA CCAAACAGGG
  M
  TTAGACTATC TCATGCCTCA TAAAAATTGC CCTTTGCCTC CATCAAAACT CTTACAAAAA
  TCAAGATATC AGAGACACTG CTTGGGTTTC TGCTAACTCA ACAACTGTGG CAAAGTAGAA
  AGGAAATGCA TTAGGCCAAT GACCAAAAAA AAAAAATGTA CATAAAGAAA GATAACAGTG
  ATGCACTCTA CTGTTGATAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61948285	NES17113777	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	A	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51667284					SNP	C	C	C	C	C	C	C	C	C	C	A	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61948285	NES17113777	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:100658458 () rs orientation: forward

Symbol	Name	Function Class
Gm57598	predicted gene, 57598	389 bp upstream
Ocln	occludin	within coordinates
Rr484926	regulatory region 484926	within coordinates