rs51667926 SNP Detail

Summary

• ID
  rs51667926
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:171043413 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCTCA AACTCCTGCT TTCCCTCCCA
  Y
  ACTGCTTTTC AACACAGAGC AGTGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss119996321	PARCsnp_1.12238	PARC_SEQ	INBRED	f	SNP			T	C
ss119997990	PARCsnp_1.01263	PARC_SEQ	INBRED	f	SNP			T	C
ss146157110	ENSMUSSNP1646192	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss320117257	CHEV_1_173145975	CHEVERUD	SCREENING_POP	f	SNP					C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs51667926					SNP	C	C	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:171043413 () rs orientation: forward

Symbol	Name	Function Class
Nr1i3	nuclear receptor subfamily 1, group I, member 3	within coordinates
Rr423243	regulatory region 423243	1813 bp distal
Tomm40l	translocase of outer mitochondrial membrane 40-like	166 bp downstream
Tssr9983	transcription start site region 9983	1837 bp downstream
Tssr9984	transcription start site region 9984	1799 bp downstream