rs51667969 SNP Detail

Summary

• ID
  rs51667969
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:111860936 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACCCACTTC AGCAAAGACT
  AGCTTGTAAA CCAAGACATT GGCTCATTAC TATATATAAT GATAGCTACA CTTCACAAAT
  AGAGCACAAT CATTTATCGA TCCAACCCAC TCTCTCCTTG CTGGCAAATC AAAACATGAT
  CAGAAGTTTG TTTGGCAAGT TCAGACAAAA TAGAATGATC TGTGTGATTT GGCTGACTAG
  Y
  AATCTCAAAA GCTGTGTCTA CACTTTGCCA GATCACAAAA TGCAAATGAG CTATCCATGA
  TTCATTATTC AGTACCACAC TCCATGAAAT GAGGATAACA ATAAGTGCCT ACTACTGCAC
  TAGATTTTTG TTGAGATAAG TTTTTTTTTC TTAACTACTG CAAAGTACTC ACAATGTCTG
  GCATGTAACG AATGCTTTAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss134277773	ENSMUSSNP5538854	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
ss325913360	CHEV_X_110064848	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs51667969					SNP	C	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:111860936 () rs orientation: forward

Symbol	Name	Function Class
Rr2637	regulatory region 2637	936 bp distal
Rr6449	regulatory region 6449	1184 bp distal