rs51668476 SNP Detail

Summary

• ID
  rs51668476
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:28686047 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAACCTACCT GACGGATCGC
  CGGCTTAGAA AGAGGGACGG CTCTCGCGAG AACGGCTCAT ATCCGGGTGG CGGAAGAAAA
  GAGGTGGGGA CAGCGGAAGT AGGTGGGTGG AAACCGGAAG CTCTTCTGAA AAGAGTTGGA
  CCGCCTAGAG TGTACCGGAA AATAGTTCCC TACTGGGAAC TAATGCGGGA GGATGAGCGT
  K
  CCGGTTTCGC TTGTTCCCGG TAGTCGTCAG CGTTCGGCTC CGTTGGTGAA AATTCTCCGC
  TCCCCTAGTT GGAGACCTGG GCAGAGTGGT GGCGGCCGGA CGGCCCTAGG AAAAAGAAAG
  AAAGCAGCTT CCTTCCCCAC GAAGATGGGA CGTTTCAAAT GTTTCATTAG TCCCCAGCTT
  TCTCCGCGTT TCCTGCTAAC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52348207	NES15378173	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51668476					SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52348207	NES15378173	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:28686047 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4510	CpG island 4510	within coordinates
Gm53713	predicted gene, 53713	21 bp upstream
Rps7	ribosomal protein S7	95 bp upstream
Rr255850	regulatory region 255850	1354 bp proximal
Rr265285	regulatory region 265285	within coordinates
Rr369505	regulatory region 369505	within coordinates
Tssr116014	transcription start site region 116014	808 bp upstream
Tssr116015	transcription start site region 116015	211 bp upstream
Tssr116016	transcription start site region 116016	183 bp upstream
Tssr116017	transcription start site region 116017	161 bp upstream
Tssr116018	transcription start site region 116018	143 bp upstream
Tssr116019	transcription start site region 116019	96 bp upstream