rs51668817 SNP Detail

Summary

• ID
  rs51668817
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:44289125 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATTCAGCTG TAAAGAAAAT
  GAGATTTGCA GAAAAATGGA CAGCTCTAAT CTTGGTTGTC AACTTCATAG GATCCCAAAT
  CATCTTTTTT TTTTTAAGAT TTATTTATTT ATTATATGTA AGTCACTGTA GCTGTCTTCC
  GACACTCCAG AAGAGGGAGT CAGATCTCAT TAGGGATAGT TGTAAGCCAC CATGTGGTTG
  Y
  TGGGATTTGA ACTCAAGAGC AGGTAAGAGC AAGGTAAGAG CAGTCGGGTG CTCTTACCTG
  CTGAGCCATC TAACCAGCTC CATCCCAAAT CATCTTATAG ATAAGCCTCT GGGCAAACCT
  ATGAGAGATT ACCTAGATCT TAATGGGGGC AGCACTACTG AATAAAGAGA AATCAGGTTG
  AGAGTAAGCA TTCTCATTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss147795883	ENSMUSSNP3107131	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs51668817					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:44289125 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7073	CpG island 7073	1598 bp proximal
Nudcd1	NudC domain containing 1	within coordinates
Rr302868	regulatory region 302868	1925 bp distal
Rr309746	regulatory region 309746	1930 bp distal
Rr311712	regulatory region 311712	475 bp proximal
Tssr131224	transcription start site region 131224	1671 bp upstream