rs51669776 SNP Detail

Summary

• ID
  rs51669776
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:96286141 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACAAGCACG AAGGACATCA
  AGATCCTTTC TTGAGACCAA TGCAGCCTGT TCTGGCCAGC CACAGCCCCA CCTTCCCCTG
  CCTCCCCACC GTAGTAGTCG TAGTACATGG GCTGAATAGC CACCTTCGAA GGCCCGCTGG
  TTTCCGGTTG CCTGTTTACC CTGAAGTTCT GCCCAGCATC CTTCTGCTTG TTGGACTTAG
  Y
  GGACATTCTT TGCCCTTGGG AGTAGGAGTG GGGCCATTCA GCATAGGTAT GTATAGAAAA
  CGAATTCGTT GTCAGGGCAA TATTTGATTC GTGAAAGGGG AGCTCAAAGA CCAACTTCTC
  CCAGAGGTGG AGCGAGGACA GGGAAGGGCC AGCCTTCCTC GTCTTGGCCG TGATCCAGTC
  GCTGTAGTCT GCCACACTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60650954	NES16266215	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51669776					SNP	T	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60650954	NES16266215	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:96286141 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ccdc113	coiled-coil domain containing 113			623 bp downstream
Prss54	serine protease 54			Coding-NonSynonymous
				Noncoding-Transcript-Variant