rs51670828 SNP Detail

Summary

• ID
  rs51670828
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:99090525 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATACTAGCTT GCAAACTTAG
  TTGCAAATGC TGCTGAGAAA ACTGGGAAAT GTGTTAGGAT TTCATTTACA TCCAAGCTGC
  AATCTCAGAA GTGTGTAGGT ATTCCTATTT GCAAATCCCA AACTAGGTTT GATGTTTTTG
  ATTTACTAAC TTTATATGCT TTAAAAACAT CTCCAAAGGT GGGACAGGGG CACAGCAGTG
  Y
  ATTGGAGTTT GGGCCAAACA AAACAAAGCT CTAGAAGTCT CCAATGTTTC TCTGAAAATT
  GATGTTTTCG ATAGTAAGTC AAAGGCTGAA ATAATTTAAA AGAAGACTGG AAAAGTACAT
  TTTCTTAAAG ACTACGAAGG GGCTGGAGAG ATAGCTCAGT GGGTGAAAAC ATTGACTATT
  CTTCCAGAGG ACTCAAGTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61200732	NES16706836	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51670828					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61200732	NES16706836	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:99090525 () rs orientation: forward

Symbol	Name	Function Class
Prkg2	protein kinase, cGMP-dependent, type II	within coordinates
Rr615191	regulatory region 615191	1440 bp distal
Tssr52014	transcription start site region 52014	1097 bp downstream
Tssr52015	transcription start site region 52015	1120 bp downstream
Tssr52016	transcription start site region 52016	1156 bp downstream
Tssr52017	transcription start site region 52017	1211 bp downstream