rs51671482 SNP Detail

Summary

• ID
  rs51671482
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:61498629 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAATCCAAA GATATATTTA
  GTGGGTATTT AAAGAGGAAT GGGATAGGAA TATATTAAAG AATCTGTTTG CCATAGTTAA
  GTCATTATGT TTCTATAAAT GCAGAACACT TAGTAAGTAT AGTAAAAAAA AAGAAATCAT
  GATTAAGGAT ACACAGAGTG ATTATTTTCA GGTATTTTGG ACATTCATTC ATAGTGTGTT
  Y
  AATGAAGGTT CATGGCAAAA CAACCCACAT TGAGTCACCA GAAGCAGGAT ACCAACGACT
  TATCATGGAC CAAGTTTCAA GAAACATGAT GTGTGATCAC ACACACACAC ACACACACAC
  ACTCAGACAC ACAGAGATAG ACAGGGAGAG ACAGAACATA AAACATATAG CTCTAAATGG
  GTTGTCTTTA TCACATCCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61823464	NES17746821	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51671482					SNP	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61823464	NES17746821	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:61498629 () rs orientation: forward

Symbol	Name	Function Class
Cts7	cathepsin 7	1646 bp downstream