rs51672262 SNP Detail

Summary

• ID
  rs51672262
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:69909991 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCTATTAGAG GGGGTCACAG TTTAGTTTTG GGGTTCACAT
  CTGAGAAAAG GATGGATTTG GCCACAGGTG CCTCCTGGAG TGATCATTTT GTACCTATAA
  R
  GAAATGGAGA ATCTGGTGTT TGGGGTGGCT TGGTGAGCTT TAGTGTTCAC CAGCAGTGTT
  TTGAGGGCAA TTTATTTAAG GAGAAGCCTG CCTGCCTCA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss132364003	ENSMUSSNP6552411	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	A
ss323732612	CHEV_11_69832667	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs51672262					SNP	G	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69909991 () rs orientation: forward

Symbol	Name	Function Class
Dlg4	discs large MAGUK scaffold protein 4	within coordinates
Rr402685	regulatory region 402685	1630 bp upstream
Rr402686	regulatory region 402686	1996 bp upstream
Rr450197	regulatory region 450197	276 bp distal
Rr450198	regulatory region 450198	1801 bp proximal
Tssr102629	transcription start site region 102629	1957 bp downstream
Tssr102630	transcription start site region 102630	1073 bp downstream
Tssr102631	transcription start site region 102631	766 bp downstream
Tssr102632	transcription start site region 102632	681 bp downstream
Tssr102633	transcription start site region 102633	318 bp downstream