rs51672764 SNP Detail

Summary

• ID
  rs51672764
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:79618811 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTGGGGTC CCAGAGGTAC
  AGGGGCGAGA GGGCCTTAAA TGGCACCTTG TCTGGGGCTC CCGAGTGAAG GGTTCAACTC
  AAACCAGGAG GAATGATAGA CGATAAGACA ACTGTTATAC TGAGGCTAGG ATGGCAAGAG
  TGGAGTTATA ACTGTTTGGA TTTTTGTCCT CACTACATAT ATCAGTCCCT GTCTGTGTTA
  R
  TGGAGTTTGT CACGATCCAT AGGGGATGGA GCAGGTGCCA CCCCGAAGCG ACGAGTTCAG
  GAGGGGGCAG CATAGTGGGT CTTGGTTACA AGGGTGACTG TGGATTAAGG GCGGCGGCTG
  GAGTTGACCA TATATCAAAC CATAAACCAT GTATCTAGGT AGTCAACCCT CAGTACAATT
  GTTCATTTAG GATGAATGCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52386762	NES15268961	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	G	A	A	G	A	G	G
SNP Consensus Information
SNP					Consensus Type	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51672764					SNP	A	A	A	G	A	A	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52386762	NES15268961	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:79618811 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1811	CpG island 1811	1572 bp distal
Cpgi1812	CpG island 1812	1363 bp proximal
Fstl3	follistatin-like 3	347 bp downstream
Prss57	serine protease 57	within coordinates
Rr216651	regulatory region 216651	611 bp distal
Rr216652	regulatory region 216652	within coordinates
Rr225111	regulatory region 225111	1410 bp distal
Tssr94390	transcription start site region 94390	1993 bp downstream
Tssr94391	transcription start site region 94391	1816 bp downstream