rs51673560 SNP Detail

Summary

• ID
  rs51673560
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127294128 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATTGATGCT CTTGGGTCCC
  AAATTTGATC ATCTGTAGAT CTTATTGATT TTTACAGTTC AATCATATCT GCATTTTCTC
  TATTCTTCTC ATTCACACCA CCATCATGGC TCAACATTCT AATACACACA GCATAAAACC
  GGGCTGCATG TTCGCACCTG TGCACTGCAC AGCTTGAAAC AGATCTAGAA AGAGAAATGT
  Y
  GTGTCTGGGA CACGACAGCC TGCCCTGCCT TTCCCATCTT CCTTACTGCA TCCCTTCTGT
  GCACTTTGCT CCTCTTGATG GGATTTGTAT TCACTTGTTT ATCCTTTGAG GCTCACCTAG
  GACTTGAAGG CAGAGTCCAC GAGAGCACGG CCGAGCACCT TTGGATATTA TTATATCCAG
  AAAATGTTAA AGATCCGAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss61079233	NES16586933	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs51673560					SNP	C	C	C	C	C	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61079233	NES16586933	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127294128 () rs orientation: forward

Symbol	Name	Function Class
Ank2	ankyrin 2, brain	1129 bp upstream
Cpgi13791	CpG island 13791	1070 bp distal
Gm64355	predicted gene, 64355	1773 bp downstream
Rr584800	regulatory region 584800	988 bp distal
Tssr35576	transcription start site region 35576	1441 bp upstream
Tssr35577	transcription start site region 35577	1408 bp upstream
Tssr35578	transcription start site region 35578	1386 bp upstream
Tssr35579	transcription start site region 35579	1342 bp upstream