rs51673929 SNP Detail

Summary

• ID
  rs51673929
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:76476071 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACATCTAGT CCATGAGAAC
  ATAAGGCTGA TACCAGCATC TCTGTCCACA CCACAGTCGT GAGCATGCTC TGTGCACTTC
  ATCACAGGCT GGAAATAACA CCTGGTGAGC GTGTTCTGTG GCATGTGACG AGACACATGT
  GCCTTCTGGG TGGTCTAACC GTGAACTTTC TCTAGATGGT GTTTGGGAGA AGCAACAGTT
  Y
  CCTTATCACT TCTCAGAGAT CATATAATGA GCTGGACTCA CACCGTGACC CCACCACACA
  GCCTGCAGCC TTCAGACTGC CAGTCTTCTG GGTAATTAGA ACAAGTCGGG CACGTTTGGC
  TGCTTAGTTT AAGGCACTTA TGGCGTGGCT TTGGCCTTCT GACCCTGGAG TCTCTCACTT
  TCTTGGGTGT GGATGGTCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss63183947	NES17459502	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51673929					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63183947	NES17459502	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:76476071 () rs orientation: forward

Symbol	Name	Function Class
Rr347327	regulatory region 347327	730 bp proximal
Tssr151998	transcription start site region 151998	55 bp upstream