rs51674978 SNP Detail

Summary

• ID
  rs51674978
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:33451643 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACTTAAGGC TGCAGTGGCA
  GGGATGCGCT CAGAAGCTGT GCGTCTTTCA GGATCAGTGC AGAACTGATG CAGGCCCGAG
  AGATGCAGGC TTCTTCTACA CTGTTTAGGA AGACAAGAAA GAAAAGGAGA GCCTCTCCTG
  CACCATCCAC CGGATGATAA TGACCTTTGG AGAGTCCAAC AGCCATCTTG ACTATCTGTG
  S
  ATTTACTATT TTGTTTTTTA AGTAGGCTGA GAGGACCCGA GGTGTGTGGG CTTGATAGAC
  GATTCGTTAG TCATCGACAC AGGACTGTGT TTCATTATGT CGCCAGGGTT TTCCTCAGGA
  AACCGACACC AACACTAAAT GCAGGTCTGC TTTTAGGTAT AATTAAGAAA AGGGGAAAAA
  AGAAAAGGAA TAAAAATGAA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61592281	NES17542692	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	G	C	G	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51674978					SNP	C	C	C	C	C	C	C	C	C	C	G	C	G	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61592281	NES17542692	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:33451643 () rs orientation: forward

Symbol	Name	Function Class
Efcab10	EF-hand calcium binding domain 10	377 bp downstream
Gm47506	predicted gene, 47506	within coordinates
Gm61262	predicted gene, 61262	within coordinates
Rr256108	regulatory region 256108	1643 bp distal
Rr260275	regulatory region 260275	1358 bp proximal
Rr267149	regulatory region 267149	1758 bp proximal