rs51675248 SNP Detail

Summary

• ID
  rs51675248
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:144576069 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAAAAAGAT GGCTTAGCAG
  CTAAAGGCAC TTGCAGCCAA ACCTGACAAT CTGAGTTTGA TTCCCAAGAC CCACGTGGTA
  GAAGAAGAGA ACTGACTTCT ACAAGTTGTC CTCTGGTCTC CAGCCCTGCA CCGTGGCACA
  TGTGGGCCCA CACACACACA CACACTCACA TGCCCACAAA ACAAATGAAT AAAAATGTAA
  Y
  AAAACAATTT TTAAAGGGGT GAGAAAAATA GCATCAACAA AAGTAATACA TATATACATT
  TTTACCTAGG TATAGTTGTA GAGATTAGAG ATGTGGCTCA GTGTCAGATT CTTGCCTATA
  ATTACAAGAT CCTAGGTTCT AATCCCAGCA CTGACAAGTA AAAACTGAGG GTGGAAAGAT
  GGCTCAGGGG TCAGAGTATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss144618761	ENSMUSSNP3385530	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs51675248					SNP	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:144576069 () rs orientation: forward

Symbol	Name	Function Class
D5Dcr36	DNA Segment, Chr 5, Derry C. Roopenian 36	1214 bp proximal
D5Mit43	DNA segment, Chr 5, Massachusetts Institute of Technology 43	1169 bp proximal
D5Mit43.2	DNA segment, Chr 5, Massachusetts Institute of Technology 43.2	1276 bp proximal
Gm71822	predicted gene, 71822	within coordinates
Rr624456	regulatory region 624456	356 bp distal
Rr624457	regulatory region 624457	411 bp distal