rs51675644 SNP Detail

Summary

• ID
  rs51675644
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  128
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:26755228 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAGGCAGGCA TGCCTTTGCT CACCAGTTTC TCCGTCCTCT
  CACACAGAGA GAATTTGACT CTTTCTAGGC AAGAGGATCC CTTGGACCCA TGGTAGCATA
  R
  GTGGGTATCT ATCCCTTCCA TCCCAGAAGC TTCTCCTCCC ATTCATCCTG CAGGACATGA
  TATGTGTGAG CTCTGTTATG TATCAGAAGC CCCCACGGGC                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60554816	NES16569719	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	A	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51675644					SNP	G	G	G	G	G	G	G	G	A	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60554816	NES16569719	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:26755228 () rs orientation: forward

Symbol	Name	Function Class
Gm34606	predicted gene, 34606	within coordinates
Gm50275	predicted gene, 50275	121 bp downstream
Gm64855	predicted gene, 64855	495 bp downstream
Rr405114	regulatory region 405114	1796 bp upstream
Tssr5048	transcription start site region 5048	897 bp downstream
Tssr5049	transcription start site region 5049	846 bp upstream
Tssr5050	transcription start site region 5050	418 bp downstream