rs51676734 SNP Detail

Summary

• ID
  rs51676734
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:69573868 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGCAC ACACAACAAA AGAATTTGGG
  R
  CTGTGTGGGA GATAAACACA AAATA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss132360120	ENSMUSSNP3177695	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs51676734					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69573868 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3142	CpG island 3142	749 bp distal
Rr450067	regulatory region 450067	1207 bp distal
Rr450068	regulatory region 450068	984 bp distal
Rr450069	regulatory region 450069	468 bp distal
Rr450070	regulatory region 450070	79 bp distal
Rr450071	regulatory region 450071	791 bp proximal
Senp3	SUMO/sentrin specific peptidase 3	958 bp upstream
Tnfsf13	tumor necrosis factor (ligand) superfamily, member 13	within coordinates
Tnfsf13os	tumor necrosis factor (ligand) superfamily, member 13, opposite strand	within coordinates
Tnfsfm13	tumor necrosis factor (ligand) superfamily, membrane-bound member 13	within coordinates
Tssr102519	transcription start site region 102519	1281 bp upstream
Tssr102520	transcription start site region 102520	1313 bp upstream
Tssr102521	transcription start site region 102521	1354 bp upstream
Tssr102522	transcription start site region 102522	1447 bp upstream
Tssr102523	transcription start site region 102523	1509 bp upstream
Tssr108774	transcription start site region 108774	1238 bp upstream
Tssr108775	transcription start site region 108775	1186 bp upstream
Tssr108776	transcription start site region 108776	1146 bp upstream
Tssr108777	transcription start site region 108777	1089 bp upstream
Tssr108778	transcription start site region 108778	1061 bp upstream
Tssr108779	transcription start site region 108779	1037 bp upstream
Tssr108780	transcription start site region 108780	963 bp upstream