rs51679344 SNP Detail

Summary

• ID
  rs51679344
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:174125916 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATTCACGTA CGGATCCTCA
  TTCCCCTGAA TATTTACAAT TTTGCGTTCT GGTTTTCAAT TGTTTGGTGG CTATGCTCAT
  GGAGAAAAAG TTGAGGAGTG GGGACAACCC CCCGTGGGAA TCTATACTTG GCTTCTAAAA
  TCCGCTAACC TGTAGCTATC TTACTCCCTT CGCTCGCTAG ACCTCGATAT CCAGCCCCCC
  M
  CCCCCCATGC TTTGGCCAAA TCTACTCAAA CAAGGTTCCC GCCTGCCACC TGCCGGCCCA
  CTAGGGTCTG CGCCATGAGC TATGCGCCAA CGCACAGCTC GCGGGGAGGC ACTCCCGCCC
  CCAAACACCT CCCTACTGCA CATGCCCGGC AGAAGTCCGC GCAACTTTAT AGGGCCCCAT
  TGCCCCATCT CTCCTCAGTC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	LG/J	SM/J
ss148341299	ENSMUSSNP2093654	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
ss320627356	CHEV_2_174109624	CHEVERUD	SCREENING_POP	f	SNP		A	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	LG/J	SM/J
rs51679344					SNP	C	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:174125916 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12855	CpG island 12855	within coordinates
Gnas	GNAS complex locus	197 bp upstream
Gnasas1	GNAS antisense RNA 1	within coordinates
Rr41274	regulatory region 41274	within coordinates
Rr56204	regulatory region 56204	within coordinates
Tssr789	transcription start site region 789	105 bp upstream
Tssr790	transcription start site region 790	145 bp upstream
Tssr22087	transcription start site region 22087	189 bp upstream
Tssr22088	transcription start site region 22088	487 bp upstream
Tssr22089	transcription start site region 22089	1150 bp upstream
Tssr22090	transcription start site region 22090	1174 bp upstream
Tssr22091	transcription start site region 22091	1229 bp upstream
Tssr28006	transcription start site region 28006	1041 bp downstream