rs51679460 SNP Detail

Summary

• ID
  rs51679460
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:3648247 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAGCACCCA GTGCGCGAGG
  CTGACCTGAA ACACCAGCCA ATTCTCATGG TAGGCTCTGC TCCTGACCTA TGAAGCCCTG
  CCTACCAGGC TTGGCTCCTC CCCTTTGCAC TTTCCTGCAA AGTTTCTAGC TTGTGCTTGA
  ACCTCCCTTC AGGCTCTACC CACTAATTCT CGTTACACTC CCCAAATGGT TCCTCTAGCC
  W
  TGCCCTCAAG CTCAGCCCAT TAGGTGTAGC TCCTCCAACC AGTTTTAGCC CCTCCCACAA
  AGCTTAGCTC CCCCTATCAA GCCTACCTCC ATTTTCCAAG CCTAGCTTTT CCATCAAGCT
  AAGGGTGTCA CACTCAGTTC TGCAGATCAT ACCTGGCTCC TCCCTCAAGT TGCTATACCC
  TTCCACTCCT CAGGTTCCTC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61076721	NES16055127	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51679460					SNP	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61076721	NES16055127	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:3648247 () rs orientation: forward

Symbol	Name	Function Class
Camsap3	calmodulin regulated spectrin-associated protein family, member 3	within coordinates
Rr189485	regulatory region 189485	154 bp proximal
Rr381636	regulatory region 381636	within coordinates
Tssr76064	transcription start site region 76064	1723 bp downstream
Tssr76065	transcription start site region 76065	68 bp upstream
Tssr76066	transcription start site region 76066	92 bp upstream
Tssr76067	transcription start site region 76067	107 bp upstream
Tssr76068	transcription start site region 76068	124 bp upstream
Tssr76069	transcription start site region 76069	196 bp upstream
Tssr76070	transcription start site region 76070	346 bp upstream
Tssr76071	transcription start site region 76071	395 bp upstream
Tssr76072	transcription start site region 76072	1274 bp upstream