rs51680090 SNP Detail

Summary

• ID
  rs51680090
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:43812519 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGCAGAACA CAGGGACAAG
  ACAGGAAACA CCTTGATGTC TTTCCTCTTG GTATTGGATG ATAACATGGG TTCCTCAATA
  AATACATTTC TGAACGAGCT ATCCAAATAG AAATACATTT ATTTACTCTT TTATACCTCA
  TCAACTACCT AGCCACCAGT ACATATGATT GACCTGTCCA GGCTTGGGAT CTTTCTCCTA
  M
  AAAATAGAAC TACCGTCTTA TTCTTTATAG TTTATTTAGC TAGTATAATA ATTACCCATT
  CTTCCATTTC AAACTAGAAA CTATGAGTTT TTCATAAACA GAAAACTTGT TACGTGAGCT
  TAGATCCAGT CAGGGCTCAT TAGCTTCCTT AGAAAAAGTT AACTTTGGGC CTGGGGTGGT
  GGTTCAGCTG GTAAAACTGT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62740097	NES17341101	PERLEGEN	MM_PANEL2	f	SNP	C	C	A	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51680090					SNP	C	C	A	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62740097	NES17341101	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:43812519 () rs orientation: forward

Symbol	Name	Function Class
Mep1a	meprin 1 alpha	within coordinates
Rr339847	regulatory region 339847	118 bp distal
Rr339848	regulatory region 339848	81 bp proximal
Rr339849	regulatory region 339849	881 bp proximal
Rr341637	regulatory region 341637	919 bp distal
Tssr148121	transcription start site region 148121	1089 bp downstream
Tssr148122	transcription start site region 148122	1167 bp downstream