rs51681854 SNP Detail

Summary

• ID
  rs51681854
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:10609420 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCCATCGTC CTACTCCCCG
  GCCTACCACG ACCCACGACA AAATTCTATG CCCGTCTAAT TTTCACAAGG CTCCACTTAG
  AGGCGAGGCG GGGTGTGGAG ATCCGATTTT CAGACTTTTG GTAACAGACA AACAGGCTAC
  TCTGCATCTG CAAAATAAAA CCCTCGCTAT AATTATAATC TAAGACCCAA TTCACTTCCG
  Y
  TCGCATCTCC CTACCGACTC GAAACTTCCC TGAAGCTCTC AAAGGACCTA TTTCTACCTG
  TCCCCCGGCT CCCATCTCGA GCCTGCATTA TTTCCTGAAA TGGGAAACCC GGACATCGCT
  CCCCTCGCAA GATGAAGACC CGGAGCCGGG ATCCCCCACA CTCCGCCCGG CTCAGGCCGG
  CTCAGCAGGA GTCTCCGGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss146607056	ENSMUSSNP3880948	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
ss325524292	CHEV_18_10609418	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs51681854					SNP	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:10609420 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9702	CpG island 9702	12 bp proximal
Esco1	establishment of sister chromatid cohesion N-acetyltransferase 1	within coordinates
Rr533778	regulatory region 533778	within coordinates
Rr533779	regulatory region 533779	335 bp proximal
Rr533780	regulatory region 533780	679 bp proximal
Rr533781	regulatory region 533781	695 bp proximal
Rr533782	regulatory region 533782	1001 bp proximal
Tssr152429	transcription start site region 152429	628 bp downstream
Tssr152430	transcription start site region 152430	704 bp downstream
Tssr152431	transcription start site region 152431	849 bp downstream
Tssr152432	transcription start site region 152432	881 bp downstream
Tssr152433	transcription start site region 152433	926 bp downstream