rs51682071 SNP Detail

Summary

• ID
  rs51682071
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:88483641 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACACACACA CACACACACA
  CACACACACA CGTGCACACA CACCATCTCC ACAGCCAAAC AGAAAGTTTT TTTTTTAAGG
  GTACAGAACA TTGAGGAACC CAAAGCACCC TGGCCTCTGT ATTGAGTGAG TCCTGAGTAC
  AACACAATTG AAAAGCACCC CACCGCATCC TGCCTCTGCC ATGTTTATGG CCAAACAGGT
  Y
  CCTCTACCCT GGTAGACCAC TCAGAAGCCC AGCCACCCAT ATTTGTCCCC CTACCACTGA
  ATTTGGGCTG TGGAAGAAGA AGGCAGTTGG ACCAGGTCTT CTCTGAAGCT TCCCCCCAAA
  GCTATCATGC CTGAGAAGCC ACAGATCCCA ACGCTCTCCA ACATGTCGTC CCAGGGCTAC
  ATCAACCATA TTGTTGCCAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss63579262	NES17028525	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	T	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs51682071					SNP	C	C	C	C	C	C	C	T	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63579262	NES17028525	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:88483641 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7510	CpG island 7510	1149 bp proximal
Gm62180	predicted gene, 62180	within coordinates
Tssr132609	transcription start site region 132609	842 bp upstream
Tssr135809	transcription start site region 135809	768 bp downstream
Zdhhc25	zinc finger, DHHC domain containing 25	864 bp upstream